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Trans-eQTLs across different cancer types

In trans-eQTL analysis, we identified 231,210 eQTL−gene pairs at FDR < 0.05 in 33 cancer types for users to search or browse.

     

e.g., "PRAD"
e.g., "rs7231881"
e.g., "SMAD4"


     

Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-valule
Display
THCA rs56218634 chr11:77464834 A/G INTS4L1 chr7:64601603-64694600:+ 0.63 9.89 4.11E-21 Box Plot
THCA rs56232264 chr1:80492226 T/C PAX2 chr10:102495360-102589698:+ -0.34 -5.87 7.94E-9 Box Plot
THCA rs56234611 chr2:45491411 A/T PABPN1 chr14:23790498-23795394:+ -0.29 -6.47 2.46E-10 Box Plot
THCA rs56245057 chr6:74698219 G/T RHOG chr11:3848208-3862213:- -0.16 -5.99 4.15E-9 Box Plot
THCA rs56255880 chr8:11783585 C/A SGK223 chr8:8175258-8244008:- 0.34 6.11 2.02E-9 Box Plot
THCA rs56259958 chr1:151220893 AAG/A PIPSL chr10:95717948-95721297:- 0.34 6.13 1.87E-9 Box Plot
THCA rs56265238 chr1:111156109 T/C DLD chr7:107531415-107572175:+ -0.28 -6.35 5.04E-10 Box Plot
THCA rs56271561 chr2:132251961 G/A CCDC74B chr2:130896860-130902707:- 0.4 7.21 2.24E-12 Box Plot
THCA rs56275207 chr1:111155574 G/A DLD chr7:107531415-107572175:+ -0.28 -6.37 4.51E-10 Box Plot
THCA rs56278516 chr8:10846958 T/C SGK223 chr8:8175258-8244008:- 0.39 6.84 2.37E-11 Box Plot
THCA rs56279061 chr8:9873980 T/C SGK223 chr8:8175258-8244008:- 0.35 6.47 2.47E-10 Box Plot
THCA rs56290609 chr12:94692827 A/T C6orf176 chr6:166337536-166401527:- -0.54 -5.96 4.82E-9 Box Plot
THCA rs56304912 chr2:101148457 C/T LOC285359 chr3:101431278-101432259:+ 0.35 6.53 1.72E-10 Box Plot
THCA rs56310871 chr6:28044482 A/G BTN3A2 chr6:26365387-26378548:+ -0.29 -6.11 2.11E-9 Box Plot
THCA rs56313107 chr6:151759986 C/T NEK5 chr13:52607747-52703214:- 0.63 7.49 3.29E-13 Box Plot